Ensembl Genomes Release 32 Intentions

  • Released scheduled for 26th July 2016
  • Update to Ensembl 85 software
  • Removal of MySQL databases from release 22 from the public MySQL server
  • Update to pan-taxonomic peptide comparative genomics database

Metazoa

  • Updated genomes
    • Caenorhabditis japonica (WormBase WS250)
  • Updated data
    • Alignments of Rfam covariance models for all species
    • Updated protein features from InterPro
    • Updated BioMarts

Fungi

  • New genomes
    • Addition of newly available, completely sequenced and annotated genomes from INSDC
  • Updated genomes
    • New assemblies from INSDC for:
      • Aspergillus flavus
      • Aspergillus niger
      • Aspergillus oryzae
      • Neurospora crassa
      • Ustilago maydis
      • Verticillium dahliae
    • Update of existing genomes to new assemblies and annotation where available in INSDC
  • New data
    • Addition of cross-references to PHI-base where available
    • Addition of non-coding RNA gene models based on Rfam family matches
  • Updated data
    • Gene families
    • Updated protein features from InterPro
    • Updated peptide comparative genomics
    • Updated BioMarts

Protists

  • New genomes
    • Addition of newly available, completely sequenced and annotated genomes from INSDC
  • Updated genomes
    • New assemblies from INSDC for:
      • Phytophthora sojae
      • Thalassiosira pseudonana
    • New annotations from INSDC for:
      • Plasmodium berghei
      • Plasmodium chabaudi
      • Plasmodium knowlesi
      • Plasmodium falciparum
      • Dictyostelium discoideum
      • Plasmodium vivax
    • Update of existing genomes to new assemblies and annotation where available in INSDC
    • Transfer of Rhodophyta genomes from Ensembl Protists to Ensembl Plants
  • New data
    • Addition of cross-references to PHI-base where available
    • Addition of non-coding RNA gene models based on Rfam family matches
  • Updated data
    • Gene families
    • Updated peptide comparative genomics
    • Updated BioMarts
    • Updated protein domain information based on latest InterProScan

Plants

  • New genomes
    • Trifolium pratense
    • Brassica napus
    • Beta vulgaris
    • Galdieria sulphuraria
    • Chondrus crispus
    • Transfer of Rhodophyta genomes from Ensembl Protists to Ensembl Plants
  • Updated genomes
    • Triticum aestivum
    • Zea mays
  • Updated data
    • Updated protein features from InterPro
    • Updated peptide comparative genomics
    • Updated BioMarts

Bacteria

  • New genomes
    • Addition of newly available, completely sequenced and annotated genomes from INSDC
  • Updated genomes
    • Update of existing genomes to new assemblies and annotation where available
  • New data
    • Addition of cross-references to PHI-base where available
    • Addition of non-coding RNA gene models based on Rfam family matches
  • Updated data
    • Gene families